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Algorithms in computational molecular biology : techniques, approaches and applications / by Mourad Elloumi, Albert Y. Zomaya.

By: Elloumi, Mourad.
Contributor(s): Zomaya, Albert Y | Wiley InterScience (Online service).
Material type: materialTypeLabelBookSeries: Wiley series in bioinformatics.Publisher: Oxford : Wiley-Blackwell, 2010Description: pages.Content type: text Media type: computer Carrier type: online resourceISBN: 9780470892107; 0470892102.Subject(s): Molecular biology -- Data processing | Algorithms | Bioinformatics -- Mathematical modelsGenre/Form: Electronic books.Additional physical formats: Print version:: Algorithms in computational molecular biology.DDC classification: 572.80285 Online resources: Wiley Online Library
Contents:
Strings Processing and Application to Biological Sequences. String Data Structures for Computational Molecular Biology / Christos Makris, Evangelos Theodoridis -- Efficient Restricted-Case Algorithms for Problems in Computational Biology / Patricia A Evans, H Todd Wareham -- Finite Automata in Pattern Matching / Jan Holub -- New Developments in Processing of Degenerate Sequences / Pavlos Antoniou, Costas S Iliopoulos -- Exact Search Algorithms for Biological Sequences / Eric Rivals, Leena Salmela, Jorma Tarhio -- Algorithmic Aspects of ARC-Annotated Sequences / Guillaume Blin, Maxime Crochemore, Sťphane Vialette -- Algorithmic Issues in DNA Barcoding Problems / Bhaskar DasGupta, Ming-Yang Kao, Ion Mandoiu -- Recent Advances in Weighted DNA Sequences / Manolis Christodoulakis, Costas S Iliopoulos -- DNA Computing for Subgraph Isomorphism Problem and Related Problems / Sun-Yuan Hsieh, Chao-Wen Huang, Hsin-Hung Chou -- Analysis of Biological Sequences. Graphs in Bioinformatics / Elsa Chacko, Shoba Ranganathan -- A Flexible Data Store for Managing Bioinformatics Data / Bassam A Alqaralleh, Chen Wang, Bing Bing Zhou, Albert Y Zomaya -- Algorithms for the Alignment of Biological Sequences / Ahmed Mokaddem, Mourad Elloumi -- Algorithms for Local Structural Alignment and Structural Motif Identification / Sanguthevar Rajasekaran, Vamsi Kundeti, Martin Schiller -- Evolution of the Clustal Family of Multiple Sequence Alignment Programs / Mohamed Radhouene Aniba, Julie Thompson -- Filters and Seeds Approaches for Fast Homology Searches in Large Datasets / Nadia Pisanti, Mathieu Giraud, Pierre Peterlongo -- Novel Combinatorial and Information-Theoretic Alignment-Free Distances for Biological Data Mining / Chiara Epifanio, Alessandra Gabriele, Raffaele Giancarlo, Marinella Sciortino -- Methods for the Analysis of Metabolites and Drug Molecules / Varun Khanna, Shoba Ranganathan -- Motif Finding and Structure Prediction. Motif Finding Algorithms in Biological Sequences / Tarek El Falah, Mourad Elloumi, Thierry Lecroq -- Computational Characterization of Regulatory Regions / Enrique Blanco -- Algorithmic Issues in the Analysis of Chip-Seq Data / Federico Zambelli, Giulio Pavesi -- Approaches and Methods for Operon Prediction based on Machine Learning Techniques / Yan Wang, You Zhou, Chunguang Zhou, Shuqin Wang, Wei Du, Chen Zhang, Yanchun Liang -- Protein Function Prediction with Data-Mining Techniques / Xing-Ming Zhao, Luonan Chen -- Protein Domain Boundary Prediction / Paul D Yoo, Bing Bing Zhou, Albert Y Zomaya -- An Introduction to RNA Structure and Pseudoknot Prediction / Jana Sperschneider, Amitava Datta -- Phylogeny Reconstruction. Phylogenetic Search Algorithms for Maximum Likelihood / Alexandros Stamatakis -- Heuristic Methods for Phylogenetic Reconstruction with Maximum Parsimony / Adrien Go︠ffon, Jean-Michel Richer, Jin-Kao Hao -- Maximum Entropy Method for Composition Vector Method / Raymond H-F Chan, Roger W Wang, Jeff C-F Wong -- Microarray Data Analysis. Microarray Gene Expression Data Analysis / Alan Wee-Chung Liew, Xiangchao Gan -- Biclustering of Microarray Data / Wassim Ayadi, Mourad Elloumi -- Computational Models for Condition-Specific Gene and Pathway Inference / Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen -- Heterogeneity of Differential Expression in Cancer Studies: Algorithms and Methods / Radha Krishna, Murthy Karuturi -- Analysis of Genomes. Comparative Genomics: Algorithms and Applications / Xiao Yang, Srinivas Aluru -- Advances in Genome Rearrangement Algorithms / Masud Hasan, Sohel Rahman -- Computing Genomic Distances: An Algorithmic Viewpoint / Guillaume Fertin, Irena Rusu -- Wavelet Algorithms for DNA Analysis / Carlo Cattani -- Haplotype Inference Models and Algorithms / Ling-Yun Wu -- Analysis of Biological Networks. Untangling Biological Networks Using Bioinformatics / Gaurav Kumar, Adrian P Cootes, Shoba Ranganathan -- Probabilistic Approaches for Investigating Biological Networks / Jeremie Bourdon, Damien Eveillard -- Modeling and Analysis of Biological Networks with Model Checking / Dragan Bo₍nacki, Ronny S Mans -- Reverse Engineering of Molecular Networks from a Common Combinatorial Approach / Bhaskar Dasgupta, Paola Vera-licona, Eduardo Sontag -- Unsupervised Learning for Gene Regulation Network Inference from Expression Data: A Review / Mohamed Elati, Celine Rouveirol -- Approaches to Construction and Analysis of Microrna-Mediated Networks / Ilana Lichtenstein, Albert Zomaya, Jennifer Gamble, Mathew Vadas.
Summary: This book represents the most comprehensive and up-to-date collection of information on the topic of computational molecular biology. Bringing the most recent research into the forefront of discussion, Algorithms in Computational Molecular Biology studies the most important and useful algorithms currently being used in the field, and provides related problems. It also succeeds where other titles have failed, in offering a wide range of information from the introductory fundamentals right up to the latest, most advanced levels of study.
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Strings Processing and Application to Biological Sequences. String Data Structures for Computational Molecular Biology / Christos Makris, Evangelos Theodoridis -- Efficient Restricted-Case Algorithms for Problems in Computational Biology / Patricia A Evans, H Todd Wareham -- Finite Automata in Pattern Matching / Jan Holub -- New Developments in Processing of Degenerate Sequences / Pavlos Antoniou, Costas S Iliopoulos -- Exact Search Algorithms for Biological Sequences / Eric Rivals, Leena Salmela, Jorma Tarhio -- Algorithmic Aspects of ARC-Annotated Sequences / Guillaume Blin, Maxime Crochemore, Sťphane Vialette -- Algorithmic Issues in DNA Barcoding Problems / Bhaskar DasGupta, Ming-Yang Kao, Ion Mandoiu -- Recent Advances in Weighted DNA Sequences / Manolis Christodoulakis, Costas S Iliopoulos -- DNA Computing for Subgraph Isomorphism Problem and Related Problems / Sun-Yuan Hsieh, Chao-Wen Huang, Hsin-Hung Chou -- Analysis of Biological Sequences. Graphs in Bioinformatics / Elsa Chacko, Shoba Ranganathan -- A Flexible Data Store for Managing Bioinformatics Data / Bassam A Alqaralleh, Chen Wang, Bing Bing Zhou, Albert Y Zomaya -- Algorithms for the Alignment of Biological Sequences / Ahmed Mokaddem, Mourad Elloumi -- Algorithms for Local Structural Alignment and Structural Motif Identification / Sanguthevar Rajasekaran, Vamsi Kundeti, Martin Schiller -- Evolution of the Clustal Family of Multiple Sequence Alignment Programs / Mohamed Radhouene Aniba, Julie Thompson -- Filters and Seeds Approaches for Fast Homology Searches in Large Datasets / Nadia Pisanti, Mathieu Giraud, Pierre Peterlongo -- Novel Combinatorial and Information-Theoretic Alignment-Free Distances for Biological Data Mining / Chiara Epifanio, Alessandra Gabriele, Raffaele Giancarlo, Marinella Sciortino -- Methods for the Analysis of Metabolites and Drug Molecules / Varun Khanna, Shoba Ranganathan -- Motif Finding and Structure Prediction. Motif Finding Algorithms in Biological Sequences / Tarek El Falah, Mourad Elloumi, Thierry Lecroq -- Computational Characterization of Regulatory Regions / Enrique Blanco -- Algorithmic Issues in the Analysis of Chip-Seq Data / Federico Zambelli, Giulio Pavesi -- Approaches and Methods for Operon Prediction based on Machine Learning Techniques / Yan Wang, You Zhou, Chunguang Zhou, Shuqin Wang, Wei Du, Chen Zhang, Yanchun Liang -- Protein Function Prediction with Data-Mining Techniques / Xing-Ming Zhao, Luonan Chen -- Protein Domain Boundary Prediction / Paul D Yoo, Bing Bing Zhou, Albert Y Zomaya -- An Introduction to RNA Structure and Pseudoknot Prediction / Jana Sperschneider, Amitava Datta -- Phylogeny Reconstruction. Phylogenetic Search Algorithms for Maximum Likelihood / Alexandros Stamatakis -- Heuristic Methods for Phylogenetic Reconstruction with Maximum Parsimony / Adrien Go︠ffon, Jean-Michel Richer, Jin-Kao Hao -- Maximum Entropy Method for Composition Vector Method / Raymond H-F Chan, Roger W Wang, Jeff C-F Wong -- Microarray Data Analysis. Microarray Gene Expression Data Analysis / Alan Wee-Chung Liew, Xiangchao Gan -- Biclustering of Microarray Data / Wassim Ayadi, Mourad Elloumi -- Computational Models for Condition-Specific Gene and Pathway Inference / Yu-Qing Qiu, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen -- Heterogeneity of Differential Expression in Cancer Studies: Algorithms and Methods / Radha Krishna, Murthy Karuturi -- Analysis of Genomes. Comparative Genomics: Algorithms and Applications / Xiao Yang, Srinivas Aluru -- Advances in Genome Rearrangement Algorithms / Masud Hasan, Sohel Rahman -- Computing Genomic Distances: An Algorithmic Viewpoint / Guillaume Fertin, Irena Rusu -- Wavelet Algorithms for DNA Analysis / Carlo Cattani -- Haplotype Inference Models and Algorithms / Ling-Yun Wu -- Analysis of Biological Networks. Untangling Biological Networks Using Bioinformatics / Gaurav Kumar, Adrian P Cootes, Shoba Ranganathan -- Probabilistic Approaches for Investigating Biological Networks / Jeremie Bourdon, Damien Eveillard -- Modeling and Analysis of Biological Networks with Model Checking / Dragan Bo₍nacki, Ronny S Mans -- Reverse Engineering of Molecular Networks from a Common Combinatorial Approach / Bhaskar Dasgupta, Paola Vera-licona, Eduardo Sontag -- Unsupervised Learning for Gene Regulation Network Inference from Expression Data: A Review / Mohamed Elati, Celine Rouveirol -- Approaches to Construction and Analysis of Microrna-Mediated Networks / Ilana Lichtenstein, Albert Zomaya, Jennifer Gamble, Mathew Vadas.

This book represents the most comprehensive and up-to-date collection of information on the topic of computational molecular biology. Bringing the most recent research into the forefront of discussion, Algorithms in Computational Molecular Biology studies the most important and useful algorithms currently being used in the field, and provides related problems. It also succeeds where other titles have failed, in offering a wide range of information from the introductory fundamentals right up to the latest, most advanced levels of study.

Electronic reproduction. Hoboken, N.J. : Wiley InterScience, 2011. Mode of access: World Wide Web. System requirements: Web browser. Title from title screen (viewed on Feb. 9, 2011). Access may be restricted to users at subscribing institutions.

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